CTRL + E without merging?

Hi, well I have issue in my icon library that some icons are not changing colors when using them in other files/projects. I know that fix is to do CTRL+E and publish library but I have several hundred icons and that’s not possible because If I select all of them and click CTRL+E it will merge them. 

Is there some other fix ? I know that color not changing is known Figma bug.